SE3020885

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1022
  • Malus domestica
  • SE3020885
  • Mutator
  • MadM18
  • MDC000168.241:1539-1725
  • TTGTTTGGA
  • GAGAGAAATGCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGTTTG             AAAARACACCCTTA       CT --            C     CA     TT      ACAATA      AATA
       GAGAGAAATGCTA              AAAGTGA  C  TTTATGAACTCT TGTTG  TCATA  TTTAAC      TTTTAT    
       |||||||||||||              |||||||  |  |||||||||||| |||||  |||||  ||||||      ||||||    T
       TTCTCTTTACGAT              TTTCACT  G  AAGTACTTGAGA ATAGT  AGTGT  AAATTG      AAAGTA    
AGGTTTG             -CTCTCTGATAAAG       TT TA            T     AG     -T      CAATTA      CAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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