SE3020887

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1024
  • Malus domestica
  • SE3020887
  • Mutator
  • MadM10
  • MDC025921.27:64-290
  • CTCAAGTAG
  • GTAGGGACAAGGATTGTCTGCCCTCCTTGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
 CTCAA T                             CCTG        CATATCCTCCTA                   A                GATTAC    CA       CTTATT
      G AGGGACAAGGATTGTCTGCCCTCCTTGTT    TGCCCTTC            TTTGTGTGGTCACGGTTAA CCACGTCAATATTTTA      TATT  TTTTTGT      
      | |||||||||||||||||||||||||||||    ||||||||            ||||||||||||||||||| ||||||||||||||||      ||||  |||||||       
      C TCCCTGTTCCTAACAGACGGGAGGAACAA    ACGGGAAG            AAACACACCAGTGCCAATT GGTGTAGTTGTAAAAT      ATAA  AAAAATA      
GATGAA -                             AAGA        ---------ACA                   C                ------    KA       TCTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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