Plant MITE

SE3020890

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1027
Malus domestica
SE3020890
Mutator
MadM11
MDC018306.235:4500-4665
TTCTCTAAA
AAGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACTCCTT

Secondary structure and sequence

TSD TIR

5'

3'

TTCTCTA          C             C            A A   T    -GTTAA    T T      -   TTCTTCT
       AAGGGGTGTG TATCCACACACCC TTTTTACTTCTC C CAC CCTT      TTTC G CCGTTG ATC       
       |||||||||| ||||||||||||| |||||||||||| | ||| ||||      |||| | |||||| |||       A
       TTCCCCACAC ATAGGTGTGTGGG AAAAATGAAGAG G GTG GGAA      AAAG C GGCAGC TAG       
AAATCTC          T             A            - -   T    AAACCA    C -      C   CCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020890

TTCTCTAAAGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCACACACTCCTTGTTAATTTCTGTCCGTTGATCTTCTTCTATTCATCCGATCCGACGGCCGAAAACCAAAAAGGTGTGGGAGAAGTAAAAAAGGGTGTGTGGATATCACACCCCTTCTCTAAA

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