SE3020893

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1030
  • Malus domestica
  • SE3020893
  • Mutator
  • MadM26
  • MDC004113.187:2045-2271
  • CAATGTTGA
  • CAATGTTGAGGAATTGGATTGGCTC

Secondary structure and sequence

TSD    TIR
5'



3' 
         A           G    CAAACC        C    C                AC     GTTGATT    TGTAAAA  -    AGAG            GTAA   AC
 CAATGTTG GGAATTGGATT GCTC      TTAGTGTC GGAG CTAAGGATCAACATAT  GAATT       AGTG       GA GATC    CTGTTGATTTGT    TGT  
 |||||||| ||||||||||| ||||      |||||||| |||| ||||||||||||||||  |||||       ||||       || ||||    ||||||||||||    |||   
 GTTGTAAC CCTTAACCTAG TGAG      AATCATAG CTTC GATTCCTAGTTGTATA  CTTGA       TCAC       CT CTAG    GATAATTGAGTA    GCG  
A        -           G    ACCTAA        A    A                GA     -AGTGTT    --TGAAG  G    ---A            --AA   AT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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