SE3020896

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1033
  • Malus domestica
  • SE3020896
  • Mutator
  • MadM12
  • MDC008780.83:12198-12437
  • TCCTTATTC
  • GGAAAAGGATCCTCGCCGGATCCTTTTCCTGGGGATCCTAGGGATCYCGTGATCGTGACTGTTCATCGTATATCGTGCGGTTAGTTTTCGTTAGGTACTATTTATATTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TCCTTATTC                CG    C    C     G           CYC     C    C    C  C               A TTT     AGG  CT     -T     AT
         GGAAAAGGATCCTCGC  GATC TTTT CTGGG ATCCTAGGGAT   GTGAT GTGA TGTT AT GTATATCGTGCGGTT G   TCGTT   TA  ATTTA  ATTTA  
         ||||||||||||||||  |||| |||| ||||| |||||||||||   ||||| |||| |||| || ||||||||||||||| |   |||||   ||  |||||  |||||   
         CCTTTTCCTAGGAGCG  CTAG AAAA GACCC TAGGATCCTTA   CACTA CACT GTAA TA CATGTAGCATGCTAG C   AGTAA   GT  TAAAT  TAAAT  
CTTATTCCT                TA    A    A     -           AGA     A    A    A  A               C TTT     --A  TT     TT     TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End