SE3020902

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1039
  • Malus domestica
  • SE3020902
  • Mutator
  • MadM10
  • MDC022383.92:5326-5561
  • ATATGTATA
  • ATATGTATAGGAGGCAGATTGTATGCCCTCCTGTTTGGGTGCTATTCTCATCCCCTCCTATTTTGTACGGTCACTGTTAAGCCGCATCAACATTTTATATTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
         A     C       A                  C          C   C      T         CT         CA     A            TTTATAGAGATAAT
 ATATGTAT GGAGG AGATTGT TGCCCTCCTGTTTGGGTG TATTCTCATC CCT CTATTT GTACGGTCA  GTTAAGCCG  TCAAC TTTTATATTTTT              
 |||||||| ||||| ||||||| |||||||||||||||||| |||||||||| ||| |||||| |||||||||  |||||||||  ||||| ||||||||||||              A
 TATGTATA CCTCC TCTAACA ACGGGAGGATAAACCCAC GTAAGGGTAG GGA GATAAA CATGCCAGT  CAATTCGGT  AGTTG AAAATATAAAAA              
A        -     A       G                  A          A   A      -         AC         AC     A            TAACAAAAAACAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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