SE3020903

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1040
  • Malus domestica
  • SE3020903
  • Mutator
  • MadM41
  • MDC017674.419:2974-3190
  • CAGCCTACA
  • GGATTTGGATCCTCTCATGAGCCCAAGGAGAGGATTCTCCTGATCAAAATACGTGGGCCGTTGGATTTTCATCAAACGGCTATAATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
CAGCCTACA                A                     C        A                     C   A     C     T  TTATA     A
         GGATTTGGATCCTCTC TGAGCCCAAGGAGAGGATTCT CTGATCAA ATACGTGGGCCGTTGGATTTT ATC AACGG TATAA TA     ATTTT 
         |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||| ||||| ||||| ||     ||||| A
         CCTAAACCTAGGAGAG ACTCGGGTTTCTCTCCTAGGA GACTGGTT TGTGCACCTGGCAATTTAAAA TAG TTGCC ATGTT AT     TAAAA 
ACATCCGAC                G                     A        C                     A   G     A     T  CTCTC     A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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