Plant MITE

SE3020910

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1047
Malus domestica
SE3020910
Mutator
MadM8
MDC015789.239:18391-18567
TTTACATGC
CATGCGAGTAATGTTAGGGAGACCAAATTTTTTAAACTAAATTTGCAAACTAAATGATGTGGTTGTAGATGATTGGATT

Secondary structure and sequence

TSD TIR

5'

3'

TTTA    ---C          A      CC                  -T  -CAA     -AT  -TGT   TGT  A       -   ATTA
    CATG    GAGTAATGTT GGGAGA  AAATTTTTTAAACTAAAT  TG    ACTAA   GA    GGT   AG TGATTGG ATT    
    ||||    |||||||||| ||||||  ||||||||||||||||||  ||    |||||   ||    |||   || ||||||| |||     
    GTAC    CTCATTACAA CCTTCT  TTTAAAAAATTTGGTTTA  AC    TGGTT   CT    TCG   TC ATTAGCC TGA    
   C    ATTT          C      AA                  CT  ACAG     ATT  TTAT   --T  A       G   ATTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020910

TTTACATGCGAGTAATGTTAGGGAGACCAAATTTTTTAAACTAAATTTGCAAACTAAATGATGTGGTTGTAGATGATTGGATTATTAATTAAGTGCCGATTAACTTGCTTATTTCTTATTGGTGACACATCATTTGGTTTAAAAAATTTAATCTTCCCAACATTACTCTTTACATGC

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