SE3020911

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1048
  • Malus domestica
  • SE3020911
  • Mutator
  • MadM24
  • MDC017695.272:2988-3228
  • TCAAAAGAC
  • GACGGAATTGGATTCCATTCGGATTAACTTTGTGGGGATTCTAGAGATCCCCACATCTTAGTCATTCATCGTGTATCG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TCAAAA  C    TT      CA        A    T             A     C            A              GGC    AGAAATCATTTTTGACTTTTTTTATTTAAA
       GA GGAA  GGATTC  TTCGGATT ACTT GTGGGGATTCTAG GATCC CACATCTTAGTC TTCATCGTGTATCG   GGTT                              
       || ||||  ||||||  |||||||| |||| ||||||||||||| ||||| |||||||||||| ||||||||||||||   ||||                              A
       CT CCTT  CCTAGG  AGGCCTAG TGAA CACCCCTAGGATC TTAGG GTGTAGGATTGG AAGTGGCATGTAGC   ATTG                              
CAGAAAA  -    CT      AG        G    -             C     A            C              -AC    GTCAAAAGCAGTCTATGTTAAACACAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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