SE3020915

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1052
  • Malus domestica
  • SE3020915
  • Mutator
  • MadM15
  • MDC017134.300:15451-15667
  • CACTAAAAG
  • GGGAAAGAGATCATTTCYGGATCGCTTCCACTAAGGCCACCGGATCAAGTGATCCGGGCCTTTGAAATTTGATCCAAYGACTAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
CACTAAAA            A    Y    CG   C  C         C            C                    C  Y A      TTATTATACMTTTTAA    G
        GGGAAAGAGATC TTTC GGAT  CTT CA TAAGGCCAC GGATCAAGTGAT CGGGCCTTTGAAATTTGATC AA G CTAAAG                AGGG 
        |||||||||||| |||| ||||  ||| || ||||||||| |||||||||||| |||||||||||||||||||| || | ||||||                |||| G
        CCCTTTCTCTAG AGAG TCTA  GAA GT GTTCCGGTG TCTAGTTCACTA GCCTGGAAACTTTAAACTAG TT C GATTTT                TCCC 
GAAAATCA            G    G    RA   A  A         A            A                    A  G C      --------------TG    C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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