SE3020916

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1053
  • Malus domestica
  • SE3020916
  • Mutator
  • MadM11
  • MDC008890.291:6482-6647
  • AAAACACAT
  • TGGGGTGTGCTATCCACACACCCCTTTTTACTTCTCCCACACCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAACACA         C                          C       CTTG       MTRTCMT  --  TCTGCTTCAATT
        TGGGGTGTG TATCCACACACCCCTTTTTACTTCTC CACACCC    TTAATTT       TT  GA            
        ||||||||| |||||||||||||||||||||||||| |||||||    |||||||       ||  ||            C
        ACCCTACAC ATAGGTGTGTGGGGAAAAATGAAGAG GTGTGGG    AATTAAA       AG  GG            
TACACAAA         T                          A       --AA       -------  CY  CAACCTARCCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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