Plant MITE

SE3020917

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1054
Malus domestica
SE3020917
Mutator
MadM11
MDC012404.677:7584-7747
TTAACAAAG
AAAGGGGTGTGCTATCCACACACCCCAAATTACTTCCCACACACCC

Secondary structure and sequence

TSD TIR

5'

3'

TTAAC           C               AA       C         CTTG       C  T      -   TTTTTCA
     AAAGGGGTGTG TATCCACACACCCCA  TTACTTC CACACACCC    TTAATTT TG CCGTTG ATC       
     ||||||||||| |||||||||||||||  ||||||| |||||||||    ||||||| || |||||| |||       A
     TTTCCCCACAC ATAGGTGTGTGGGGT  AATGAAG GTGTGTGGG    AATTAAA GC GGCAGC TAG       
AACAA           T               AA       A         --AA       A  C      C   CCTACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020917

TTAACAAAGGGGTGTGCTATCCACACACCCCAAATTACTTCCCACACACCCCTTGTTAATTTCTGTCCGTTGATCTTTTTCAATTCATCCGATCCGACGGCCGAAAATTAAAAGGGTGTGTGAGAAGTAAAATGGGGTGTGTGGATATCACACCCCTTTAACAA

Copy Cancel