SE3020921

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1058
  • Malus domestica
  • SE3020921
  • Mutator
  • MadM15
  • MDC015226.468:158-367
  • AATTATTGA
  • AATTATTGAGAAAAGGGATGGATTCCTTCCACGTAATCCTTCTAATCAAACAAT

Secondary structure and sequence

TSD    TIR
5'



3'
     T    A  AA    -------A    TT    -    G   TC     -A          CAAAAC                    A      T   --TATA    T
  AAT ATTG GA  AGGG        TGGA  CCTT CCAC TAA  CTTCT  ATCAAACAAT      TCTTGAAATTTGATCTAACG TTAAAG TAT      ACTT 
  ||| |||| ||  ||||        ||||  |||| |||| |||  |||||  ||||||||||      |||||||||||||||||||| |||||| |||      |||| T
  TTA TAAC CT  TCCC        GCCT  GGAA GGTG ATT  GAAGG  TAGTTTGTTA      GGAACTTTAAACTAGGTTGC GATTTT GTG      TGAA 
AG   T    C  --    CAGTAGAG    -C    A    G   -T     AG          AACTTA                    C      T   CCTGGG    A

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End