Plant MITE

SE3020926

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1063
Malus domestica
SE3020926
Mutator
MadM10
MDC021104.80:10378-10615
ACTCTAGAA
TCTAGAAGGACAAGGATTGTCTGCCCTTCCACTTTCGGTGCCCTTCCGTGCCCTCCTGTTTGTGTGGTCACGATTTAGCCACGTCAACATTTTATATTA

Secondary structure and sequence

TSD TIR

5'

3'

AC      -A                              G                       -           A  T                       CTATTCA       CTTATT
  TCTAGA  GGACAAGGATTGTCTGCCCTTCCACTTTCG TGCCCTTCCGTGCCCTCCTGTTT GTGTGGTCACG TT AGCCACGTCAACATTTTATATTA       TTTTTGT      
  ||||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||       |||||||       
  AGATCT  CCTGTTCCTAACAGACGGGAGGGTGAAGGC ACGGGAGGGCACGGGAGGACAAA CACACCAGTGC AA TCGGTGTAGTTGTAAAATATAAT       AAAAATA      
 A      CA                              A                       A           C  T                       -----AA       TCTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020926

ACTCTAGAAGGACAAGGATTGTCTGCCCTTCCACTTTCGGTGCCCTTCCGTGCCCTCCTGTTTGTGTGGTCACGATTTAGCCACGTCAACATTTTATATTACTATTCATTTTTGTCTTATTATCTCTATAAAAAAATAATATAAAATGTTGATGTGGCTTAACCGTGACCACACAAAACAGGAGGGCACGGGAGGGCAACGGAAGTGGGAGGGCAGACAATCCTTGTCCACTCTAGAA

Copy Cancel