Plant MITE

SE3020928

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1065
Malus domestica
SE3020928
Mutator
MadM17
MDC011349.124:35323-35511
ATTGTCGTT
GAAAAATGCTAAGAATATTTTTTCAAAGTTGAACTCTTTATCGGCTCTCTGTTACCTAACAGTTTAATGTTAAT

Secondary structure and sequence

TSD TIR

5'

3'

ATTGTCGTT  A          AAT           -  T       T   C               -----------A   --    ---         TTC
         GA AAATGCTAAG   ATTTTTTCAAA GT GAACTCT TAT GGCTCTCTGTTACCT            ACA  GTTT   AATGTTAAT   
         || ||||||||||   ||||||||||| || ||||||| ||| |||||||||||||||            |||  ||||   |||||||||    
         CT TTTACGATTC   TGAAAAAGTTT CA CTTGAGA ATA CTGAGAGACGATGGA            TGT  CAAA   TTACAATTG   
TTGCTTGTT  C          CTC           T  C       T   C               GTATAAAAAACG   TA    ATT         TGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020928

ATTGTCGTTGAAAAATGCTAAGAATATTTTTTCAAAGTTGAACTCTTTATCGGCTCTCTGTTACCTAACAGTTTAATGTTAATTTCTGTGTTAACATTTTAAAACATTGTGCAAAAAATATGAGGTAGCAGAGAGTCCATATAGAGTTCCACTTTTGAAAAAGTCTCCTTAGCATTTCTCTTGTTCGTT

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