SE3020930

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1067
  • Malus domestica
  • SE3020930
  • Mutator
  • MadM11
  • MDC010252.317:2893-3056
  • TATGCAAAG
  • TGCAAAGGGGTGTGCTATCCACACAYCYCATTTTACTTCTCACACACTCCTTGATAATTTATGTCCTTTGATC

Secondary structure and sequence

TSD    TIR
5'



3'
TA    A         C          Y Y                  CT    GA      A  T  -  T    TTCTTCA
  TGCA AGGGGTGTG TATCCACACA C CATTTTACTTCTCACACA  CCTT  TAATTT TG CC TT GATC       
  |||| ||||||||| |||||||||| | ||||||||||||||||||  ||||  |||||| || || || ||||       A
  ACGT TCCCCACAC ATAGGTGTGT G GTAAAATGAAGAGTGTGT  GGAA  ATTAAA GC GG AG CTAG       
AA    A         T          G G                  --    AA      A  T  C  C    CYTACTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End