SE3020932

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1069
  • Malus domestica
  • SE3020932
  • Mutator
  • MadM4
  • MDC011889.202:2196-2370
  • TTTTAAGAA
  • TTTTAAGAAGAGTAATGTTATAGAGACTAAATTTGTAGAYAAAATTTTG

Secondary structure and sequence

TSD    TIR
5'



3'
         A A         TA                 YA    TT  AAAACTAAAAAACA  A    T   --  TTGATTTATTACTTACA
 TTTTAAGA G GTAATGTTA  GAGACTAAATTTGTAGA  AAAT  TG              TG AAGT GAT  GA                 
 |||||||| | |||||||||  |||||||||||||||||  ||||  ||              || |||| |||  ||                  
 AGAATTTT C CATTACAGT  TTCTGATTTAAACGTTT  TTTA  AC              GT GGTT ATT  TA                 
A        Y -         CC                 KA    CT  -----------ACA  -    -   CT  TTCGTATAAATAGTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End