Plant MITE

SE3020934

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1071
Malus domestica
SE3020934
Mutator
MadM133
MDC037527.9:6609-6838
TTGTGTCTC
GTGTCTCGGAATTGGATCCACTCCGGACTTTGGTGTTTGAAGTTTAAGGATCAATCCATCTGAATCACTGATTAGTGTCTAA

Secondary structure and sequence

TSD TIR

5'

3'

TT   T --TC            A   -                A               CC     --AAT   T      T      AAAAAATTAAGA            -    -  TG
  GTG C    GGAATTGGATCC CTC CGGACTTTGGTGTTTG AGTTTAAGGATCAAT  ATCTG     CAC GATTAG GTCTAA            CTGTTAGTTTGT GTGT GG  
  ||| |    |||||||||||| ||| |||||||||||||||| |||||||||||||||  |||||     ||| |||||| ||||||            |||||||||||| |||| ||   
  CAC G    CCTTAACCTAGG GAG GCCTGGAATCACAGAC TCGGATTCCTAGTTG  TAGAC     GTG TTAATT TAGGTT            GATAATTGAGTA TACA CC  
     T TGTT            C   A                C               AA     CCGAC   T      -      ------GTAAGA            A    A  GA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020934

TTGTGTCTCGGAATTGGATCCACTCCGGACTTTGGTGTTTGAAGTTTAAGGATCAATCCATCTGAATCACTGATTAGTGTCTAAAAAAAATTAAGACTGTTAGTTTGTGTGTGGTGAGCCAACATAATGAGTTAATAGAGAATGTTGGATTTAATTTGTGCAGCCCAGATAAGTTGATCCTTAGGCTCCAGACACTAAGGTCCGAGAGCGGATCCAATTCCTTGTGTCAC

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