Plant MITE

SE3020935

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1072
Malus domestica
SE3020935
Mutator
MadM20
MDC001241.297:19021-19237
CTTGTATTG
GTATTGGGAACTGGATCTTCTCCGAGCCAAACCCTTGGGATCCTGTTGAGCGACAAATACGAGCCGTTGGATTTCGATCCAACGACTACAA

Secondary structure and sequence

TSD TIR

5'

3'

CTT    -T    A                C               C                  A             G      C        TTGTTATAACTTAA    G
   GTAT  GGGA CTGGATCTTCTCCGAG CAAACCCTTGGGATC TGTTGAGCGACAAATACG GCCGTTGGATTTC ATCCAA GACTACAA              GAGG 
   ||||  |||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||              |||| A
   TATG  CCCT GACCTAGGAGAGGCTC GTTTGGGAGCCCTAG ACGACTCGCTGTTTGTGC CGGCAACTTAAAG TAGGTT CTGATGTT              CTCC 
 GT    TT    G                C               A                  C             G      A        ----------TATC    C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020935

CTTGTATTGGGAACTGGATCTTCTCCGAGCCAAACCCTTGGGATCCTGTTGAGCGACAAATACGAGCCGTTGGATTTCGATCCAACGACTACAATTGTTATAACTTAAGAGGGACCCTCCTATTTGTAGTCATTGGATGGAAATTCAACGGCCCGTGTTTGTCGCTCAGCAAGATCCCGAGGGTTTGCCTCGGAGAGGATCCAGGTCCCTTGTATTG

Copy Cancel