SE3020936

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1073
  • Malus domestica
  • SE3020936
  • Mutator
  • MadM107
  • MDC001047.206:9284-9482
  • ATACACCAA
  • GGAYTAGGATTYTCTCTCATTCTCTTGCCATCCTCTTTCAYCCCCTYCT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATACACCAA   Y  G    Y     CAT      ----G  A         AY     Y  YTCACATTCTCT       TTTTCTCTTACTATAAAAAATTA
         GGA TA GATT TCTCT   TCTCTT     CC TCCTCTTTC  CCCCT CT            ATTTTGT                       
         ||| || |||| |||||   ||||||     || |||||||||  ||||| ||            |||||||                       A
         CCT AT CTAA AGAGG   AGAGAA     GG AGGGGAAGG  GGGGA GA            CAGTGCC                       
AACCACATA   C  A    T     ---      AAAAR  G         GA     G  ---TAAACTTGC       AATTCSGTGCAACTGTAAAATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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