SE3020939

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1076
  • Malus domestica
  • SE3020939
  • Mutator
  • MadM8
  • MDC022424.123:6825-7012
  • AAATGCCAA
  • GGGTAAGCTAGCAAGACCAAAATTTTAAACCAAATTTGCAAACCAAATGATGTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAATGCCAA      -     C         A       -                          CACCAATAA  --AATAAACACA      A
         GGGTAA GCTAG AAGACCAAA TTTTAAA CCAAATTTGCAAACCAAATGATGTGT         GA            TTAATC 
         |||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||         ||            |||||| A
         CCTATT CGATC TTCTGGTTT AAAATTT GGTTTAAATGTTTGGTTTACTACACA         CT            AATTAG 
AACCGTAAA      A     C         A       T                          -AACAACTA  AACCTAATAATG      T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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