Plant MITE

SE3020942

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1079
Malus domestica
SE3020942
Mutator
MadM15
MDC024409.26:2144-2360
CTATTTTAA
GGAAAGGGATCCACTTCGGATCTCTTCTCCCTAATTCTCCTRATCAAATAATTTGGGCCCTTGYAATTTAATCAAATGGCTAAAGTTAT

Secondary structure and sequence

TSD TIR

5'

3'

CTATTTTAA          C AC              C C    ---    CTR               C C   Y     A         C     T   --TATA    T
         GGAAAGGGAT C  TTCGGATCTCTTCT C TAAT   TCTC   ATCAAATAATTTGGG C TTG AATTT ATCAAATGG TAAAG TAT      ACTT 
         |||||||||| |  |||||||||||||| | ||||   ||||   ||||||||||||||| | ||| ||||| ||||||||| ||||| |||      |||| T
         CCTTTCCCTA G  AGGCCTAGAGAAGG G ATTA   AGAG   TAGTTTGTTAGACCC G AAT TTAAA TAGTTTGCC ATTTT GTG      TGAA 
AATTTTATC          A AA              T A    GTC    ---               A A   T     C         A     T   CCCGGG    A

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3020942

CTATTTTAAGGAAAGGGATCCACTTCGGATCTCTTCTCCCTAATTCTCCTRATCAAATAATTTGGGCCCTTGYAATTTAATCAAATGGCTAAAGTTATTATAACTTTTAAAGTGGGCCCGTGTTTTTAACCGTTTGATCAAATTTTAAAGACCCAGATTGTTTGATGAGACTGATTAAGTGGAAGAGATCCGGAAAGAATCCCTTTCCCTATTTTAA

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