Plant MITE

SE0350001

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1080
Arabidopsis thaliana
SE0350001
PIF/harbinger
To1
chr1:26285142-26285336
TTA
AGAGCATCCTTCTTTGTAAGTTCTTAGATTAGTTTATAGGATAAGAACATCTCATTTTAACTTTTATATAAGAGACA

Secondary structure and sequence

TSD TIR

5'

3'

TT        C  C  T                    A     ----------------------                                    AAATGTC
  AGAGCATC TT TT GTAAGTTCTTAGATTAGTTT TAGGA                      TAAGAACATCTCATTTTAACTTTTATATAAGAGACA       
  |||||||| || || |||||||||||||||||||| |||||                      ||||||||||||||||||||||||||||||||||||       A
  TCTCGTAG AA AA CATTCAAGAATCTAATCAAG ATCCT                      ATTCTTGTAGAGTAAAATTGAGAATATATTCTCTGT       
AT        T  C  C                    A     AAAAGAAAAACAGTAATTAATG                                    AAAATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0350001

TTAGAGCATCCTTCTTTGTAAGTTCTTAGATTAGTTTATAGGATAAGAACATCTCATTTTAACTTTTATATAAGAGACAAAATGTCATTTAAAATGTCTCTTATATAAGAGTTAAAATGAGATGTTCTTAGTAATTAATGACAAAAAGAAAATCCTAAGAACTAATCTAAGAACTTACCAACAATGATGCTCTTA

Copy Cancel