SE0320006

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1085
  • Arabidopsis thaliana
  • SE0320006
  • Mutator
  • M1
  • chr1:16839582-16839966
  • TATTAAAAT
  • GAGTTTTATGTGCAAACAACTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATTAAAAT          TGC     AC   CAAAATCA            A     -    TT               A               T              C    AAGA     -        T   ATC               GATAAATAATATATCAAATCGAAGCTCTCGAGATAAAGAGTACAAT
         GAGTTTTATG   AAACA  TCT        TCTATTTTTGTA TTTTA CTTT  ACGTCTAAAAAATAT AAATAATTCTATAAA TCTAAAATAATATG AATA    TAGTC ATTTTTAT ATT   AAATTTTAAAATTTT                                              
         ||||||||||   |||||  |||        |||||||||||| ||||| ||||  ||||||||||||||| ||||||||||||||| |||||||||||||| ||||    ||||| |||||||| |||   |||||||||||||||                                               
         CTCAAAATAC   TTTGT  AGA        AGATAAAAACGT AAAAT GGAA  TGTAGATTTTTTATA TTTATTAAGATATTT AGATTTTATTATGC TTAT    ATTAG TAAAAATG TAA   ATGTATATAACATTT                                              
 AAAATTAT          TTT     -C   --------            C     A    -T               G               T              A    ----     A        T   --A               GCAAAAATGTTAGTGTATATAAATAAAAACTTTTAAAATTTTATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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