Plant MITE

SE0320009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1088
Arabidopsis thaliana
SE0320009
Mutator
M3
chr1:6906138-6906476
TTATTATAA
TATTATAAGGGT

Secondary structure and sequence

TSD TIR

5'

3'

T   T        TAAT   -    C                   C     A                                                        ACTTT   CTGTTTGATACGTACACTTAGATTGTACACCACTTTTAATGTACAAATATATATAA
 TAT ATAAGGGT    TTG CAAA TAGTCACTTTTTTAAACTT ATTGG AAAGTAGTCACTTTACTATTCATAATTTGCAAAATAGTCACTTTTCACTGTTTGAT     TCA                                                        
 ||| ||||||||    ||| |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||                                                        A
 ATA TATTCCCA    AAC GTTT ATCAGTGAAAAAGTTTGAA TAATC TTTCATCAGTGAAATGATAAGTATTAAACGTTTTATCAGTGAAAAGTGACAAACTA     GCA                                                        
A   T        -CAC   T    T                   T     C                                                        ----A   TGTGAACCTAACATGTAGTGAAAAGAATATGTTTACATTTCACATGCGACACATAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0320009

TTATTATAAGGGTTAATTTGCAAACTAGTCACTTTTTTAAACTTCATTGGAAAAGTAGTCACTTTACTATTCATAATTTGCAAAATAGTCACTTTTCACTGTTTGATACTTTTCACTGTTTGATACGTACACTTAGATTGTACACCACTTTTAATGTACAAATATATATAAAAATACACAGCGTACACTTTACATTTGTATAAGAAAAGTGATGTACAATCCAAGTGTACGAATCAAACAGTGAAAAGTGACTATTTTGCAAATTATGAATAGTAAAGTGACTACTTTCCTAATTAAGTTTGAAAAAGTGACTATTTTGTCAACACACCCTTATTATAA

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