Plant MITE

SE0320012

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1091
Arabidopsis thaliana
SE0320012
Mutator
M3
chr5:16642063-16642384
TTTATTTTA
AGGGTGTGTTGGCAAAATAGTCACTTTTTCAAACTTAATTAAGAAAGTAGTCACTTTACTATTTATAATTTGCAAAATAGTCACTTTTCACAGTTTGATTCGTACACTTGGATTGTACATCACTTTTAGTATACAAATGTAAAGTGTAC

Secondary structure and sequence

TSD TIR

5'

3'

TTTATTTT     GT   G     A            C           A                C                      C         A                                      A          ---   T    GC
        AGGGT  GTT GCAAA TAGTCACTTTTT AAACTTAATTA GAAAGTAGTCACTTTA TATTTATAATTTGCAAAATAGT ACTTTTCAC GTTTGATTCGTACACTTGGATTGTACATCACTTTTAGT TACAAATGTA   AAG GTAC  
        |||||  ||| ||||| |||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||   ||| ||||  T
        TCTCA  TAA CGTTT ATCAGTGAAAAA TTTGAATTAAT TTTTCATCAGTGAAAT ATAAGTATTAAACGTTTTATCA TGAAAAGTG CAAACTAAGCATGTGAATCTAACATGTAGTGAAAATCA ATGTTTATAT   TTT TATG  
ATTTTATT     AT   A     G            A           C                A                      A         A                                      C          ATA   T    TG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0320012

TTTATTTTAGGGTGTGTTGGCAAAATAGTCACTTTTTCAAACTTAATTAAGAAAGTAGTCACTTTACTATTTATAATTTGCAAAATAGTCACTTTTCACAGTTTGATTCGTACACTTGGATTGTACATCACTTTTAGTATACAAATGTAAAGTGTACGCTGTGTATTTTTATATATATTTGTACACTAAAAGTGATGTACAATCTAAGTGTACGAATCAAACAGTGAAAAGTAACTATTTTGCAAATTATGAATAATAAAGTGACTACTTTTCTAATTAAGTTTAAAAAAGTGACTAGTTTGCAAATTAACTCTTTATTTTA

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