SE0350015

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1094
  • Arabidopsis thaliana
  • SE0350015
  • PIF/harbinger
  • To5
  • chr2:15097796-15097962
  • ATA
  • GGCTCCGAATAGTGACTACGTTTTGCGGTACGGGAGAAGTGCGGTGCGGTTCAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA    CC    A       ----   ----TTT  G   -  G  GA    CG   -    -     TAGTAATGAAA       GAT
   GGCT  GAAT GTGACTA    CGT       GC GTA CG GA  AGTG  GTG CGGT TCAAA           ATACATA   
   ||||  |||| |||||||    |||       || ||| || ||  ||||  ||| |||| |||||           |||||||    
   CCGA  CTTA CATTGAT    GCG       TG CGT GC TT  TCAC  CAT GTCA AGTTT           TATGTAT   
ATA    CA    C       TTTG   TGGGTTT  G   A  G  -G    AA   T    T     -TAGAGATATA       ACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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