SE0350016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1095
  • Arabidopsis thaliana
  • SE0350016
  • PIF/harbinger
  • To6
  • chr2:16603521-16603782
  • TAG
  • GGGTTTGAATGGTTATGGCGGTTGGGGCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAG     -       TTA      TT       ACAAAACC   -     ATCAGACCGTTTTTTATTTATCATTCATCAATTATAGTCCGCAGTGGTCTGGACTTAAAAAAATAGAAGAAAATCGTTGCG
   GGGTT TGAATGG   TGGCGG  GGGGCGG        GTC AACGG                                                                                 
   ||||| |||||||   ||||||  |||||||        ||| |||||                                                                                 G
   TCCGA ACTTACT   GTCGCC  TTTCGCC        CAG CGCCA                                                                                 
 GA     T       TCC      TG       AGATTAAA   A     AATCAGGTAGAGTAAAAACCCCACCTGTTATTTGGCGACGCCTGGTTCAAATAAACATACATTTTTGCCAGGCGTCTACCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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