SE0350017

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1096
  • Arabidopsis thaliana
  • SE0350017
  • PIF/harbinger
  • To5
  • chr4:5236780-5236946
  • ATA
  • GGCTATGAATGGTAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA  CTA        A  ------ATAGACC  -   CAAAACTGCATCGTAACAGTGCTGTAACAATATCAAAATCTCTACATAT
   GG   TGAATGGT AC             GC ACT                                                 
   ||   |||||||| ||             || |||                                                  
   CC   GCTTACCA TG             CG CTT                                                 
ATA  CAG        C  ATGCAAAACGCCA  C   CTTCAAGCCACGCCAAATTTATCATTGTTTTTATGTATTTATGTATACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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