Plant MITE

SE0330019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1098
Arabidopsis thaliana
SE0330019
hAT
Hat2
chr2:13480884-13481536
GTTTAAGA
TTTAAGATAGGCCTGGGCAT

Secondary structure and sequence

TSD TIR

5'

3'

G      A     C       AATACC   AACCGAATACCCGAACTGAAAAACCCGAAAAATAACCAAACCGAACCCGAACCCGACTTTTAGAATTATCCGAATGGGTTCTCCACTTCACTACCCGAAAAAACCCGAACCGAACCCGAACCGAATCTAATATCCGTGGGTACCCGAATACAAATGTAAAGTTAAAAATATTAGTTATATATATATATATATTTGTAATACCTCAAACACCCAAAATTAAAATTATAAATCCGAATATACTAGATTTTTTAGTAATTTATATGCATTTGGATATATTTGGGATAAAAATAACCAATGTT
 TTTAAG TAGGC TGGGCAT      CGG                                                                                                                                                                                                                                                                                                           
 |||||| ||||| |||||||      |||                                                                                                                                                                                                                                                                                                            
 GAATTT ATCCG ACCCGTA      GCC                                                                                                                                                                                                                                                                                                           
A      G     C       -----A   CATAGGCAAGCCTAAGCCAAGAAAAGGGCCCATAGCCCAGATAAGCCCATCCTCCAACTCTTGGTAAGCCCATAAGAATTTTAAACCAAGCCATAGCCAAGCCCAAGCCCAGCCAAGCCAATAAAATCATTTTTACATTTTTATTGGTTTTTATGGGTTTTATAAAAGCCCAAGCCCATAAAATAAGTATATATGGGTTTAGATGGGTTTTATGGGCTAATGGGCATTTATATAACCAATGAAAATAGGTTTATATTCGTTTACATTGGTTTTATGAATTTAATGGATTTTTTTTGATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0330019

GTTTAAGATAGGCCTGGGCATAATACCCGGAACCGAATACCCGAACTGAAAAACCCGAAAAATAACCAAACCGAACCCGAACCCGACTTTTAGAATTATCCGAATGGGTTCTCCACTTCACTACCCGAAAAAACCCGAACCGAACCCGAACCGAATCTAATATCCGTGGGTACCCGAATACAAATGTAAAGTTAAAAATATTAGTTATATATATATATATATTTGTAATACCTCAAACACCCAAAATTAAAATTATAAATCCGAATATACTAGATTTTTTAGTAATTTATATGCATTTGGATATATTTGGGATAAAAATAACCAATGTTATAGTTTTTTTTAGGTAATTTAAGTATTTTGGTTACATTTGCTTATATTTGGATAAAAGTAACCAATATATTTACGGGTAATCGGGTATTTTGGGTAGATTTGGGTATATATGAATAAAATACCCGAACCCGAAAATATTTTGGGTATTTTTGGTTATTTTTACATTTTTACTAAAATAACCGAACCGACCCGAACCCGAACCGATACCGAACCAAATTTTAAGAATACCCGAATGGTTCTCAACCTCCTACCCGAATAGACCCGATACCCGGGAAAAGAACCGAATCCGAACGGATACCCGAATGCCCACGCCTAGTTTAAGA

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