SE0320020

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1099
  • Arabidopsis thaliana
  • SE0320020
  • Mutator
  • M5
  • chr5:14698458-14699087
  • TATATATTT
  • ATATATTTGAGAAATTCCCACAAATAGCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
                       T    A           -------C   C          CTTTAAA    TTT --   AAAAATAGCATTACAAAGTTCTTTACACATAAATAGCACTCAAATAATTATTTCAGAAATTTCTAAAAGTGACAATAATAAAACCACAATTTTATATTAAATATATTCAACCAAAATAAATTAGAAATAAATTTAAAATGTTATATTTGGGTTCTCTATTTCCAAGTTAGGGTATATATTTCAACTATTTAAAAGAAATTTTGATTCATTTTAATATTAGTTTATGATATTATATTTAGGTTTCCTATTTCTAA
                        ATAT TTTGAGAAATT        CCA AAATAGCACA       GTGT   G  GAC                                                                                                                                                                                                                                                              
                        |||| |||||||||||        ||| ||||||||||       ||||   |  |||                                                                                                                                                                                                                                                               
                        TATG AGATTTTTTGA        GGT TTTATCGTGT       ATGA   A  CTT                                                                                                                                                                                                                                                              
TATCTATATCCCCCTAACTGTGTT    G           AATTATAA   T          -------    --- AA   TGAAGGTTTTTATCGTATATTTCAAAAATTAGGAGATTTTTAATTAATTTATTATTTCAAAAAATAATGGTAAACATAATTAGAGGGTTTATTTTTACTCTCGTTTGTGATTAGATTATAATTTAACTTATTTTTTTGAAAATTTATCACCTTTATATATGGGATTTAACCTTTATTTTTTGGGGTTTATATTATGATGTTTGATTAAAATTTTACTTTTTAGAGAAAATTTACCACTTTTATATATGGGATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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