SE0320023

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1102
  • Arabidopsis thaliana
  • SE0320023
  • Mutator
  • M6
  • chr1:22112068-22112762
  • TTTATTTTA
  • TATTTTAGAGTATTTATAATAAATGACTATAGATTTGAAAAGAATGTACAAATTAACCTTGAGTCACAGT

Secondary structure and sequence

TSD    TIR
5'



3'
             TT    -T    GT   TAT     AT   -        -T    ---------    T  -------     T     -TT  G    A  ATCT       -----------------         G  AACACGTGTAATTACGTAAATGTCCTTTGTAACATGTTATTTTTCCGAAATACATGCGATAACATAATATCCTCTTTTTATCTTGTTATTTTCTCTTATTACATAGTATTTGTAAAAAGCACATAGTATTTTTTGGAAAAAACATTCTATTCAGTTTAATATCTCATTTTATCATGATATTTTGTAGTAATACACGTTTTTTATTAAGATCACACGTGATTTCTTTAAAAAT
               TATT  TAGA  ATT   AATAA  GAC TATAGATT  GAAA         AGAA GT       ACAAA TAACC   GA TCAC GT    TGTCGGA                 AACATGTTG AG                                                                                                                                                                                                                                        
               ||||  ||||  |||   |||||  ||| ||||||||  ||||         |||| ||       ||||| |||||   || |||| ||    |||||||                 ||||||||| ||                                                                                                                                                                                                                                        A
               ATAA  ATCT  TGG   TTATT  TTG ATGTTTAA  CTTT         TCTT CA       TGTTT ATTGG   CT GGTG CA    ACAGCCT                 CGATGGGAA GT                                                                                                                                                                                                                                        
ATTTTATTTCCCATT    TC    AT   --T     --   T        TT    GATCGTCTC    T  AAAAAAA     T     TAC  G    -  ----       TCTTTCTTTTATTGTTT         -  AAACAACTTTCTACTTGTCATTTGCTTTGTGTAGGCACATTAAAAAGTTTTATCGTACATTGTAATTTTAAAGTGTACAATATAAATCAAATTTTTGTACGATAAAGTTTTTTGCAATACTTAAAAATTCTTTTTTGTAATAATACTTTAAGAAAATGTACTTGTCTTAGAATTTTTTTTTTTTAATATACACTAAAATTATTTTTGGTACATAATGATTTTTTATTCTTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End