SE0330027

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1106
  • Arabidopsis thaliana
  • SE0330027
  • hAT
  • Hat3
  • chr5:15296300-15297055
  • CATAAAAG
  • GCAGTGTTTTCACGCCCGACCCG

Secondary structure and sequence

TSD    TIR
5'



3' 
CATAAAA          CAC      C   -A   GTCCGGTCCGACCGGTTAACCCGTGACCCGAACACTTTTCCGGTTTGGGTTTAGTGCTAAAACCCAACAAGTTCAAAACCGAAAAAACCCACAAAAACTCGCAATTAACTCGTGACCCGGTGAACCGGTTGAACCGGCCGGGTGTGGGTTTTAAAAAGTTCTCTTGATTTTATAATAAAATATGAGATTTTAGAATTTATTCAATTATTTTTAAAAGTTTTTTCAGTTCTTAAATTCATTTGATGTTTTAGATTTTGGTGAAGACTTTACAATACCGCCTTAAAATTGAATTGAATGGTGAGAGAGACAACCGAGATTAGTTGTTTGAATTCACAATGTTTTA
       GCAGTGTTTT   GCCCGA CCG  ACC                                                                                                                                                                                                                                                                                                                                                       
       ||||||||||   |||||| |||  |||                                                                                                                                                                                                                                                                                                                                                       T
       CGTTACAAAA   TGGGCT GGC  GCT                                                                                                                                                                                                                                                                                                                                                       
GAAAATA          CTT      A   CT   ACTTGGCCTGATGGAAAACCCAGTGGTCCAGTAGCCCAGTTGACCTAATCTGGTGCTTAATTAATCAATTTTAAATAAATTATTTAAATTATAATTATCTTTAAAATCTCATAAAATATTTTTTTTTTTAAATCATAATATTTATATTTTGTTTTTATTAGTATAGTATAAATTAGTTTATATTTTAATATAATACAAATTGTTTTATATTTTAGTAAATGTGGGTTTATATATATCTTTTTTAGTTTGTTATTATTATTTCACCAATTTTTAAACTTTAGGTTGATTTACAGATTGTGGCATTGTTTATATAATCTTCTAGTAGTTACTGTCTTTATTTAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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