SE0350029

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1108
  • Arabidopsis thaliana
  • SE0350029
  • PIF/harbinger
  • To2
  • chr3:21282703-21282952
  • TAA
  • AGAGCATCCTTAATGGGGGATTTTAAACAAGTTTCTTAACAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                G  A      A --           -    ----------------------     AAAAATTTATATGATTTAAATATTCATAAGTCTCTTAACTTTGATGAAATCTAGGCAAATTG
  AGAGCATCCTTAATGG GG TTTTAA C  AAGTTTCTTAA CAAA                      GAATA                                                              
  |||||||||||||||| || |||||| |  ||||||||||| ||||                      |||||                                                              T
  TCTCGTAGGAGTTACC TC AAAATT G  TTCAGAGAATT GTTT                      TATTA                                                              
AA                A  A      C AA           T    TAACTTCACATTCATATCTATT     TAAAAATTAATACCCAAAGAATTTAAACCACTTTGGTTCTGGTTAATAGAGAATTGATTCTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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