SE0350032

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1111
  • Arabidopsis thaliana
  • SE0350032
  • PIF/harbinger
  • To9
  • chr2:6561806-6562298
  • TAA
  • AGAGCATGCACATAGTTGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA   G    C      T   --TATCC   -         -T      TTTTT  T    ATTTTAATGTTTTTTATTGTTTGATATTTTTTATGATATTCGTAATAAATTGTTTCCAGTGGTGAGACCGATATTGGTATCATTAAAAACAAAATATTTATAAAATCAAAAAATAAATTTATAAAAATATAAGATTACAAAATTACTGTAAAATTATGTCGCATAATCACGAAAAACCTACAAAATTACT
  AGA CATG ACATAG TGA       TAT GAGTATCAT  AACAAT     AC ATTA                                                                                                                                                                                              
  ||| |||| |||||| |||       ||| |||||||||  ||||||     || ||||                                                                                                                                                                                               
  TCT GTAC TGTATC ACT       TCT ATAGTTCTC  TATTTA     TA AAAA                                                                                                                                                                                              
AA   G    A      C   CTGTAAA   C         AG      ----T  -    TTATCTAGTTTGTTATCTAAATCCGAACTATGGCATAGTGACGTCACTAAGAAAACTATGGGTCATAGTCTACTACACCTCCGAGTACTAAGCAAAAACTTTCAGCAAAAAAGAACTTTTTTTTATTAAGTAAAAAGAGAGACTATCAGAAAGATGATAAAATCAGTTGATCGATATAAAAGACGCTCAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End