Plant MITE

SE0310036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1115
Arabidopsis thaliana
SE0310036
Tc1/Mariner
St6
chr2:11231319-11231549
TA
TACTCCCTCTGTTCTATAAAGTTTGATGTTTTGAGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

               AT    TT          A     ATTTTTGTT    -      T  TGT     -G          ---      --          -AACC    G   GAAAAGAG
TACTCCCTCTGTTCT  AAAG  TGATGTTTTG GTTTT         TCAT CAAGTT GA   TGTAG  TTAATATTAT   TATTAT  TTTTATTAGT     AATA AGA        
|||||||||||||||  ||||  |||||||||| |||||         |||| |||||| ||   |||||  ||||||||||   ||||||  ||||||||||     |||| |||         
ATGAGGGAGACAAGG  TTTT  ATTACAAAAC CAAAA         AGTG GTTTAA TT   ACATT  AATTATAATA   ATAATG  AAGATAATTA     TTAT TTT        
               AT    TT          C     ---------    T      T  TTT     GA          AAA      AA          GATTA    A   AAAATGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0310036

TACTCCCTCTGTTCTATAAAGTTTGATGTTTTGAGTTTTATTTTTGTTTCATCAAGTTTGATGTTGTAGGTTAATATTATTATTATTTTTATTAGTAACCAATAGAGAGAAAAGAGAAGTAAAATTTATATTATTAGATTAATAGAAAAGTAATAAAAATAATATTAAAGTTACATTTTTTAATTTGTGTGAAAAACCCAAAACATTATTTTTTTAGGAACAGAGGGAGTA

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