Plant MITE

SE0350038

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1117
Arabidopsis thaliana
SE0350038
PIF/harbinger
To12
chr5:15124905-15125122
TCA
AGAGCAACCTTAATG

Secondary structure and sequence

TSD TIR

5'

3'

TC   G  A     A  --GT    TTAATTTTGTCTTTTAACTATTTTGATGAATTGTTTTATTGAAAAAAATTATAGCTAAGAGTTTTTGTAATGGTTTGAAGCTCTT
  AGA CA CCTTA TG    AGAC                                                                                     
  ||| || ||||| ||    ||||                                                                                      
  TCT GT GGAAT AC    AGAG                                                                                     
AC   G  A     A  GTTC    AATGATGTTTAGAATCCACATTAATTAGTATTATTATACACTTATCAAATCTTCACAAAGAATCTATTCTCTATTTTCATCCATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0350038

TCAGAGCAACCTTAATGGTAGACTTAATTTTGTCTTTTAACTATTTTGATGAATTGTTTTATTGAAAAAAATTATAGCTAAGAGTTTTTGTAATGGTTTGAAGCTCTTATACCTACTTTTATCTCTTATCTAAGAAACACTTCTAAACTATTCACATATTATTATGATTAATTACACCTAAGATTTGTAGTAAGAGACTTGCAATAAGGATGGTCTCA

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