Plant MITE

SE2330005

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1124
Musa acuminata
SE2330005
hAT
Hat1
chr4:18040565-18040856
CTTAGTGT
CTTAGTGTCAAGGTATGCAATACCGTACCGTACCGGTG

Secondary structure and sequence

TSD TIR

5'

3'

     T     CAA        A     -----      A      TTTC   GTTGGCTCTGTACGGTACAGCACCGGTGTATCGAGCGGTACACCCTGGTGTACCGAACAATTTTATATATTTTCTTCATTACTGTAGCATCGTAGCACTGC
   CT AGTGT   GGTATGCA TACCG     TACCGT CCGGTG    GAG                                                                                                     
   || |||||   |||||||| |||||     |||||| ||||||    |||                                                                                                      
   GA TCGTA   CCATACGT ATGGC     ATGGCG GGCCAT    GTC                                                                                                     
CGT  T     ---        C     TTACT      -      ----   CGCCATGCATGGCCAGGCTGCCGTATGGCCATACGCCTGGCGGGCCATGGTGATATCACGATGTCATAATGTGACATCGTCACGATGTCACGATATGACAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330005

CTTAGTGTCAAGGTATGCAATACCGTACCGTACCGGTGTTTCGAGGTTGGCTCTGTACGGTACAGCACCGGTGTATCGAGCGGTACACCCTGGTGTACCGAACAATTTTATATATTTTCTTCATTACTGTAGCATCGTAGCACTGCTACAGTATAGCACTGTAGCACTGCTACAGTGTAATACTGTAGCACTATAGTGGTACCGGGCGGTCCGCATACCGGTATGCCGTCGGACCGGTACGTACCGCCTGTACCGGGCGGTATCATTCGGTACTGCATACCATGCTTAGTGC

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