SE2330007

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1126
  • Musa acuminata
  • SE2330007
  • hAT
  • Hat2
  • chr8:24805130-24805417
  • TGCATGAT
  • CATGATCAAGGTTCGCCGTACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TG    AT       C        -----          GGCGTTTCGACCCAGGCTCGGTACCGGTACGGTACGGTATACCGCTCGGTACACCCAGGTGTACCGAGCGGTACACTCACGTGTACCGAGCACTGTACACTGCTACA
  CATG  CAAGGTT GCCGTACC     GTACCGTACC                                                                                                           
  ||||  ||||||| ||||||||     ||||||||||                                                                                                           G
  GTAC  GTTCCAA CGGCATGG     CATGGCGGGC                                                                                                           
TA    GT       A        CCTGA          CATGCCCGCCATGCATGGCCAGGCTGTCCGGTCGCCATGCGCCTGGCGGGGCATGGCATGGCTCATGACATCGTCACATGTCACTGTGACATCGTCACATGTCATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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