SE2330008

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1127
  • Musa acuminata
  • SE2330008
  • hAT
  • Hat1
  • chr6:1591171-1591464
  • GTCCATCC
  • CCATGGTATGCAATACCGAATGGTACC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCCATC   T              A  G     ---------------    GATATGGGCAGTACGTACCAGTCCGATGGCATACTAGTACGCGGACCGCCCGGTACCGAACGGAACGTGCTACGGTGCTACACTGTAGCAGTGTTACAGTG
       CCA GGTATGCAATACCG AT GTACC               GCCC                                                                                                     
       ||| |||||||||||||| || |||||               ||||                                                                                                     C
       GGT CCATACGTTATGGC TG CATGG               CGAG                                                                                                     
CCTACCT   T              A  G     TCACAAAGCTCTAAC    CCATGCCATACCATGGCCGTATGGCTCGACATGTGGTCCCGTATGGCTCGCCATGTGGTCCCACATGGCTTGTCAAAATATATAAAAAGAAGGAATGACAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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