Plant MITE

SE2320009

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1128
Musa acuminata
SE2320009
Mutator
M1
chr7:746246-746536
TGCTATAAA
CTATAAAGGGCTAATTACAGATTATCCCTTGTAATTAGCTATGTTTAGCATTCCGGTCCCTACATTTTTAAAAATTACATTTAGTTTCCTATACTTACGAAAGTGAAATTTTGAGATCTCTATACAAAGTT

Secondary structure and sequence

TSD TIR

5'

3'

TG    -AA             G             A        G         C         C          A   C   T  T     A                  -     ----GAT     T        AAAAA  AAGA
  CTAT   AGGGCTAATTACA ATTATCCCTTGTA TTAGCTAT TTTAGCATT CGGTCCCTA ATTTTTAAAA TTA ATT AG TTCCT TACTTACGAAAGTGAAAT TTTGA       CTCTA ACAAAGTT     TC    
  ||||   ||||||||||||| ||||||||||||| |||||||| ||||||||| ||||||||| |||||||||| ||| ||| || ||||| |||||||||||||||||| |||||       ||||| ||||||||     ||     
  GATA   TCCCGATTAATGT TAATGGGGGACAT AATCGATG AAATCGTAG GCTAGGGAT TGAAAGTTTT AAT TAA TC AGGGA ATGAATGCTTTCACTTTA AAATT       GAGGT TGTTTCGG     AG    
 A    GCG             A             C        G         A         A          C   A   C  T     A                  T     GGGCAAC     -        -GAAG  AGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2320009

TGCTATAAAGGGCTAATTACAGATTATCCCTTGTAATTAGCTATGTTTAGCATTCCGGTCCCTACATTTTTAAAAATTACATTTAGTTTCCTATACTTACGAAAGTGAAATTTTGAGATCTCTATACAAAGTTAAAAATCAAGAAAGAGAGAAGGGCTTTGTTGGAGCAACGGGTTAAATATTTCACTTTCGTAAGTAAAGGGATCTCAATATAACTTTTGAAAGTATAGGGATCGAGATGCTAAAGGTAGCTAACTACAGGGGGTAATATGTAATTAGCCCTGCGATAGA

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