SE2330010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1129
  • Musa acuminata
  • SE2330010
  • hAT
  • Hat3
  • chr11:23767560-23767812
  • CTGTATAC
  • GTATACCAAGGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
CT     --C      T  ---------AAA    -    CGTACCGACGTTTCGATATTCGTTCGGTATGGTACGATACAATATACCGAGCGGTATACCGTTCGATATATCGCTCGGTGTATATATATATAT
  GTATA   CAAGGT TG            TATC GTAT                                                                                             
  |||||   |||||| ||            |||| ||||                                                                                             A
  CATAT   GTTCCA AC            TATG CGGG                                                                                             
       TTC      T  GTCAAAACTTAT    A    TATGGCCCGCCATGTATGGCCAGGCAGTCGACTAGCCATGTGCCTGGCGGGCAATGGCCTGCCATATATATATATATATATATATATATATAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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