Plant MITE

SE2330011

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1130
Musa acuminata
SE2330011
hAT
Hat4
chr11:17520714-17520988
CTTTCAAG
CTTTCAAGCAAGGTTCGCCGTACT

Secondary structure and sequence

TSD TIR

5'

3'

   TC          C        -----     A --     C    TGACCCGGGTTCGGTACGGTATGGTACCGGTGTACCGGGTGGTACATCGGGATGTACCGAGAGGTACACCCTGGTTTACCGAATAATTTTATAC
CTT  AAGCAAGGTT GCCGTACT     ATACC T  ACCGG ATTT                                                                                              
|||  |||||||||| ||||||||     ||||| |  ||||| ||||                                                                                               
GAA  TTCGTTCCAG CGGTATGG     CATGG C  GCATG GCCC                                                                                              
   CT          A        CTTCG     - AG     -    GCCATACATGGCCAGACTGTCCAATGGCCATACGCCTGACGAGCCATGGCGATGTCACGATGTCATGATATGACATCTTGACGATGTCATATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330011

CTTTCAAGCAAGGTTCGCCGTACTATACCATACCGGCATTTTGACCCGGGTTCGGTACGGTATGGTACCGGTGTACCGGGTGGTACATCGGGATGTACCGAGAGGTACACCCTGGTTTACCGAATAATTTTATACTTTATACTGTAGCAGTTCTACAGTATAGTACTGTAGCACTGTAGCGGTACCGAGCAGTCCGCATACCGGTAACCTGTCAGACCGGTACATACCGCCCGGTACGGACGGTACGCTTCGGTATGGCAGACCTTGCTTTCAAG

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