SE2330014

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1133
  • Musa acuminata
  • SE2330014
  • hAT
  • Hat1
  • chr5:18211932-18212253
  • GTTTAAAG
  • TTTAAAGCAAGGTATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
G      G  A        A        --        TGTTTCGAGATTGGCTCGGTACGGTATGGTACCGGTGTATCGAGTGATACACCAGGGCGTACCGAGCGGTACACCTTGGTGTACCGAACAATTTTATATATTTTCTTTATTACTATAGTACCGT
 TTTAAA CA GGTATGCA TATCGTAC  CGTACCGG                                                                                                                            
 |||||| || |||||||| ||||||||  ||||||||                                                                                                                            A
 AAATTT GT CCATACGT CATGGCTT  CATGGCGG                                                                                                                            
G      G  A        -        AC        ACCATGCCCGCCATGCATGGCTAGACTGTCGTATGGCCATGCACCTGGCAGGCCATGGCGATATCACGATGTCTTAATGTGATATCGTCACGATGTCATGACGTCACGATATGACATCGTCACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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