Plant MITE

SE2330016

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1135
Musa acuminata
SE2330016
hAT
Hat1
chr4:17959376-17959620
GTTTGAGG
TTTGAGGCAGGGTTTGC

Secondary structure and sequence

TSD TIR

5'

3'

G      G          --C         CA        --- GTACGGGCGGTACGTACCGGTCCGACAGATTTTCGGTACGCGGATCGACTGTTACCGGTCCGAGTACTGTAGCAGTTACTGT
 TTTGAG CAGGGTTTGC   GTACCGAGC  TACCGCCC   G                                                                                  
 |||||| ||||||||||   |||||||||  ||||||||   |                                                                                   
 GAGTTT GTTCCAAGCG   TGGCATGGC  ATGGCCAT   G                                                                                  
G      G          TTA         --        AAA CTGGACCCAAGCCATGGTCATGCCATGCCATATGGCTCGCCATGTGGACCAACATGGCTCATGACATCGTACGATGTCATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330016

GTTTGAGGCAGGGTTTGCCGTACCGAGCCATACCGCCCGGTACGGGCGGTACGTACCGGTCCGACAGATTTTCGGTACGCGGATCGACTGTTACCGGTCCGAGTACTGTAGCAGTTACTGTAGTACTGTAGCATGCTACAGTACTCGGTACAACCAGGTGTACCGCTCGGTATACCGTACCGTACTGGTACCGAACCCAGGTCGAAATACCGGTACGGTACGGTATTGCGAACCTTGGTTTGAGG

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