Plant MITE

SE2330019

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1138
Musa acuminata
SE2330019
hAT
Hat1
chr3:5753932-5754158
CTTCAAAT
CAGGGTCTGC

Secondary structure and sequence

TSD TIR

5'

3'

CTTCAAAT      C   --C         C    CA  C  --- AT  ACCGGTCCGACAGGTTGTCGGTACGCGGACCGACTGTTACCGGTCCGAGTGCACTGTAGCACTGTAGCA
        CAGGGT TGC   GTACCGAGC GTAC  CC GG   T  GT                                                                     
        |||||| |||   ||||||||| ||||  || ||   |  ||                                                                      
        GTTCCA GCG   TGGCATGGC ATGG  CC AT   G  CT                                                                     
TAAACTTC      A   TTA         -    --  -  AAA --  AGACCCGAGCCATGGCCATGCCATGCCATATGGCTCGCCATGTAGGTCCACATGGCTCATGACATCGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330019

CTTCAAATCAGGGTCTGCCGTACCGAGCCGTACCACCCGGTATGTACCGGTCCGACAGGTTGTCGGTACGCGGACCGACTGTTACCGGTCCGAGTGCACTGTAGCACTGTAGCAGTGCTACAGTACTCGGTACACCTGGATGTACCGCTCGGTATACCGTACCGTACCGGTACCGAGCCCAGATCGAAATACCGGTACGGTACGGTATTGCGAACCTTGCTTCAAAT

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