Plant MITE

SE2330020

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1139
Musa acuminata
SE2330020
hAT
Hat1
chr6:1591171-1591464
GGATGGAC
CCAAGGTATGCAATACCG

Secondary structure and sequence

TSD TIR

5'

3'

GGATGGA   A              TACC        GTT CGAGATTGGCTCGGTACGGTATGGTACCGGCATACCGAGCTGTACACCAGGGCATACCGAGCGGTACACCAGGGTGTACCGAACAGTTTTATATATTTTTCTTCCTT
       CCA GGTATGCAATACCG    GTACCAGT   T                                                                                                           
       ||| ||||||||||||||    ||||||||   |                                                                                                           A
       GGT CCATACGTTATGGC    CATGGCGG   G                                                                                                           
CAGGTAG   A              TTAC        --- CTATACCCGTCATGCATGGTCAGGCTACCGTATGATCATGCGCCTGGCGGGCCATGGCTTGCCTTGCACGATGCCACGATGTGACATCGTCACAATGTCACGATGTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330020

GGATGGACCAAGGTATGCAATACCGTACCGTACCAGTGTTTCGAGATTGGCTCGGTACGGTATGGTACCGGCATACCGAGCTGTACACCAGGGCATACCGAGCGGTACACCAGGGTGTACCGAACAGTTTTATATATTTTTCTTCCTTACTGTAGCACTGTAACACTGCTACAGTGTAGCACCGTAGCACGTTCCGTTCGGTACCGGGCGGTCCGCGTACTAGTATGCCATCGGACTGGTACGTACTGCCCATATCGGGCGGTACCATTCGGTATTGCATACCATGGGATGGAC

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