SE2330022

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_1141
  • Musa acuminata
  • SE2330022
  • hAT
  • Hat4
  • chr4:16180660-16180941
  • CTTTAAAC
  • TTTAAACCAAGGTTCGTTATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
C      C       C       ------         TCGGCGTTTCGACCCGGGCTCGATACGGTACGGTACCGGTGTACTAGGCGGTACATCAGGGCGTATGGAGCGGTATACCCTGGTGTACCGAACAAATTTTTATTTA
 TTTAAA CAAGGTT GTTATAT      CGTACCGTA                                                                                                          
 |||||| ||||||| |||||||      |||||||||                                                                                                           
 AAATTT GTTCCAG CGGTATG      CATGGCGGG                                                                                                          
C      C       A       ACTTCG         TCATGCCTGCCATGTAAGGCCAGGCTGTCCAATGGCCATGCGCCTGGCGGGCCATGGCAATGTCACGATGTCATGATATGACATCGTGACGATATCATATTTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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