Plant MITE

SE2330027

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1146
Musa acuminata
SE2330027
hAT
Hat1
chrUn_random:30520317-30520673
GTTAAATC
CCAAGGT

Secondary structure and sequence

TSD TIR

5'

3'

GTTAAAT       T  CA    -     --           TTCGACCTGGGCTCGGTACCGGTACGGTATGGTGTACCGAGCAGTACACCCAGGTGCACCGAGCACTGTAGCAGTGTTACAGTGCATTGCTATAGTGTACTGGTGCACTGTACTGCTACTATAACAGTGCACTGCAACA
       CCAAGGT CG  ATAC CGTAC  CGTACCGGTAT                                                                                                                                           
       ||||||| ||  |||| |||||  |||||||||||                                                                                                                                           G
       GGTTCCA GA  CGGT TGGCT  GCATGGTGGGC                                                                                                                                           
CTAAACT       -  --    A     TA           CATGCCCGCCATGCATGGCCAGGCTGTCCGGTTGCCATGCGCCTGGCGGGCGATTGCCAGGCGACATCGTCACATGACATCGTGACATCGTCGTATCACATGACAACGTCACGTGACATCGTGACGCTGTCATGTTAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330027

GTTAAATCCAAGGTTCGCAATACCGTACCGTACCGGTATTTCGACCTGGGCTCGGTACCGGTACGGTATGGTGTACCGAGCAGTACACCCAGGTGCACCGAGCACTGTAGCAGTGTTACAGTGCATTGCTATAGTGTACTGGTGCACTGTACTGCTACTATAACAGTGCACTGCAACAGTAATTGTACTGTCGCAGTGCTACAGTGCACTGCAACAGTACACTATGCTGCTACAGTGCTACAGTACACTGCTACAGCGGACCGTTAGCGGGCGGTCCGCGTACCGTTGGCCTGTCGGACCGGTACGTACCGCCCGTACCGGGTGGTACGATTCGGTATGGCAGACCTTGGTCAAATC

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