Plant MITE

SE2330029

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_1148
Musa acuminata
SE2330029
hAT
Hat1
chr8:33623559-33623858
CCTTCACC
CAAGGTATGCAATACC

Secondary structure and sequence

TSD TIR

5'

3'

CCTTCACC  A        A    ----A         AAT TTTCGAGGTTGGCTCGGTACGGTACGGTACCGGTGTATCGAGCGGTACACCCTGGTATACCGAACAATTTTATATATTTTCTTTATTACTGTAGCAATTTAGTACTGCTAC
        CA GGTATGCA TACC     TATCGTACC   G                                                                                                               
        || |||||||| ||||     |||||||||   |                                                                                                               A
        GT CCATACGT ATGG     CATGGCGGG   C                                                                                                               
CCACTTCC  A        C    CTTAC         --- TATGCCCGCCATGCATGATCAGGTTGCTGTATGGCTATGCACCTGGCGGGCCATGGCGATGTCACGATGTCATAATATGACATCATCACGATGTCACTATATTATGATACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2330029

CCTTCACCCAAGGTATGCAATACCATATCGTACCAATGTTTCGAGGTTGGCTCGGTACGGTACGGTACCGGTGTATCGAGCGGTACACCCTGGTATACCGAACAATTTTATATATTTTCTTTATTACTGTAGCAATTTAGTACTGCTACAGCATAGTATTATATCACTGTAGCACTACTACAGTATAATACTGTAGCACTGTAGCGGTACCGGGCGGTCCACGTATCGGTATGTCGTTGGACTAGTACGTACCGCCCGTATCGGGCGGTACCATTCGGTACTGCATACCATGCCTTCACC

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